{"id":501,"date":"2022-05-19T23:51:03","date_gmt":"2022-05-19T23:51:03","guid":{"rendered":"https:\/\/gero.usc.edu\/labs\/irimialab\/?page_id=501"},"modified":"2026-03-26T17:46:35","modified_gmt":"2026-03-26T17:46:35","slug":"software","status":"publish","type":"page","link":"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/","title":{"rendered":"Software"},"content":{"rendered":"<div class=\"wpb-content-wrapper\"><p>[vc_row][vc_column][vc_column_text css=&#8221;&#8221;]<\/p>\n<h4 class=\" d-flex flex-wrap flex-items-center wb-break-word f3 text-normal\"><strong class=\"mr-2 flex-self-stretch\"><a href=\"\/\/github.com\/irimia-laboratory\/USC_BA_estimator\" target=\"_blank\" rel=\"noopener\" data-pjax=\"#repo-content-pjax-container\">Github | 3D-CNN BA estimator<\/a><\/strong><\/h4>\n<p dir=\"auto\">Example code for estimating brain age (BA) value from a raw T1-weighted MRI scan (brain.mgz file). The code package is available in Python. Running the code in Google Colab is recommended.<\/p>\n<p>[\/vc_column_text][vc_separator][vc_column_text css=&#8221;&#8221;]<\/p>\n<h4 class=\" d-flex flex-wrap flex-items-center wb-break-word f3 text-normal\"><strong class=\"mr-2 flex-self-stretch\"><a href=\"https:\/\/github.com\/irimia-laboratory\/Graph_UNet\" target=\"_blank\" rel=\"noopener\" data-pjax=\"#repo-content-pjax-container\">Github | GNN LBA estimator<\/a><\/strong><\/h4>\n<p dir=\"auto\">Example code for estimating local brain age (LBA) from a mesh of the cortical surface, in FreeSurfer resolution ico6. The code package is available in Python.<\/p>\n<p>[\/vc_column_text][\/vc_column][\/vc_row][vc_row][vc_column][\/vc_column][\/vc_row][vc_row el_class=&#8221;justify-text&#8221;][vc_column][vc_separator css=&#8221;&#8221;][\/vc_column][vc_column][\/vc_column][\/vc_row][vc_row el_class=&#8221;justify-text&#8221;][vc_column][\/vc_column][vc_column][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"<p>[vc_row][vc_column][vc_column_text css=&#8221;&#8221;] Github | 3D-CNN BA estimator Example code for estimating brain age (BA) value from a raw T1-weighted MRI scan (brain.mgz file). The code package is available in Python. Running the code in Google Colab is recommended. [\/vc_column_text][vc_separator][vc_column_text css=&#8221;&#8221;] Github | GNN LBA estimator Example code for estimating local brain age (LBA) from a [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-full.php","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-501","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.3 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Software - The Irimia Lab<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Software - The Irimia Lab\" \/>\n<meta property=\"og:description\" content=\"[vc_row][vc_column][vc_column_text css=&#8221;&#8221;] Github | 3D-CNN BA estimator Example code for estimating brain age (BA) value from a raw T1-weighted MRI scan (brain.mgz file). The code package is available in Python. Running the code in Google Colab is recommended. [\/vc_column_text][vc_separator][vc_column_text css=&#8221;&#8221;] Github | GNN LBA estimator Example code for estimating local brain age (LBA) from a [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/\" \/>\n<meta property=\"og:site_name\" content=\"The Irimia Lab\" \/>\n<meta property=\"article:modified_time\" content=\"2026-03-26T17:46:35+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/software\\\/\",\"url\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/software\\\/\",\"name\":\"Software - The Irimia Lab\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/#website\"},\"datePublished\":\"2022-05-19T23:51:03+00:00\",\"dateModified\":\"2026-03-26T17:46:35+00:00\",\"breadcrumb\":{\"@id\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/software\\\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/software\\\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/software\\\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Software\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/#website\",\"url\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/\",\"name\":\"The Irimia Lab\",\"description\":\"\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\\\/\\\/gero.usc.edu\\\/labs\\\/irimialab\\\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Software - The Irimia Lab","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/","og_locale":"en_US","og_type":"article","og_title":"Software - The Irimia Lab","og_description":"[vc_row][vc_column][vc_column_text css=&#8221;&#8221;] Github | 3D-CNN BA estimator Example code for estimating brain age (BA) value from a raw T1-weighted MRI scan (brain.mgz file). 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[\/vc_column_text][vc_separator][vc_column_text css=&#8221;&#8221;] Github | GNN LBA estimator Example code for estimating local brain age (LBA) from a [&hellip;]","og_url":"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/","og_site_name":"The Irimia Lab","article_modified_time":"2026-03-26T17:46:35+00:00","twitter_card":"summary_large_image","twitter_misc":{"Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/","url":"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/","name":"Software - The Irimia Lab","isPartOf":{"@id":"https:\/\/gero.usc.edu\/labs\/irimialab\/#website"},"datePublished":"2022-05-19T23:51:03+00:00","dateModified":"2026-03-26T17:46:35+00:00","breadcrumb":{"@id":"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/gero.usc.edu\/labs\/irimialab\/software\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/gero.usc.edu\/labs\/irimialab\/software\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/gero.usc.edu\/labs\/irimialab\/"},{"@type":"ListItem","position":2,"name":"Software"}]},{"@type":"WebSite","@id":"https:\/\/gero.usc.edu\/labs\/irimialab\/#website","url":"https:\/\/gero.usc.edu\/labs\/irimialab\/","name":"The Irimia Lab","description":"","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/gero.usc.edu\/labs\/irimialab\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"}]}},"_links":{"self":[{"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/pages\/501","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/comments?post=501"}],"version-history":[{"count":2,"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/pages\/501\/revisions"}],"predecessor-version":[{"id":1300,"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/pages\/501\/revisions\/1300"}],"wp:attachment":[{"href":"https:\/\/gero.usc.edu\/labs\/irimialab\/wp-json\/wp\/v2\/media?parent=501"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}