Software

Connectograms: Create maps of the brain connectome using Circos

This example shows how to create maps of the brain connectome using Circos — a connectogram.

FreeSurfer Software Suite

An open source neuroimaging toolkit for processing, analyzing, and visualizing human brain MR images

Github | 3D-CNN BA estimator

Example code for estimating brain age (BA) value from a raw T1-weighted MRI scan (brain.mgz file). The code package is available in Python. Run code in Google Colab is recommended.

3D Slicer

A free, open source and multi-platform software package widely used for medical, biomedical, and related imaging research.

SlicerDMRI

An open-source project to improve and extend diffusion magnetic resonance imaging software in 3D Slicer.

• WhiteMatterAnalysis (WMA) provides fiber clustering and tractography analysis tools. View the project on GitHub.

Wikipedia | Connectome

Learn more about connectograms.

TBISegmentation Tutorial

Tutorial on automatic segmentation of traumatic brain injury MRI volumes using ATLAS based classification and 3D Slicer. Created by Andrei Irimia, Micah Chambers and Jack Van Horn.