Software

Connectograms: Create maps of the brain connectome using Circos

This example shows how to create maps of the brain connectome using Circos — a connectogram.

FreeSurfer Software Suite

An open source neuroimaging toolkit for processing, analyzing, and visualizing human brain MR images.

Github | 3D-CNN BA estimator

Example code for estimating brain age (BA) value from a raw T1-weighted MRI scan (brain.mgz file). The code package is available in Python. Running the code in Google Colab is recommended.

3D Slicer

A free, open source and multi-platform software package widely used for medical, biomedical, and related imaging research.

SlicerDMRI

An open-source project to improve and extend diffusion magnetic resonance imaging software in 3D Slicer.

Wikipedia | Connectome

Learn more about connectograms.

TBISegmentation Tutorial

Tutorial on automatic segmentation of traumatic brain injury MRI volumes using ATLAS based classification and 3D Slicer. Created by Andrei Irimia, Micah Chambers and Jack Van Horn.

greatbrowser

A python module for predicting the functions of cis-regulatory regions.