Databases and other resources
Online Databases
Databases on aging:
- Human Ageing Genomic Resources
- Lifespan observation database
- Age related databases (JenAge)
- Digital Ageing Atlas
Genome browsers:
- UCSC Genome Browser
- ENSEMBL Genome Browser
- NCBI Genome
- African Turquoise Killifish Genome Browser
- Mouse Genome Informatics at JAX
Interaction and network databases:
Pathway informations:
- Gene Ontology Consortium
- KEGG
- Wikipathways
- GSEA/MSigDB
- REACTOME
- Biocarta
- Panther
- ConnectivityMap
- GTEX
- OMIM
Transcription factors, target genes and motifs:
- Transcription Factor Encyclopedia
- JASPAR (TF motifs)
- TRANSFAC (TF motifs)
- STAMP (motif clustering and alignement)
- ChEA (Curated TF binding from ChIP-X experiments)
- ReMap2018 (Curated TF binding from ChIP-X experiments)
Epigenomics resources:
Genomic data repositories:
Other Important Resources
Transgenic mouse ordering:
Literature resources:
- Norris Medical Library
- Pubmed
- MouseMine
- Mouse Genetics (Lee M. Silver) at MGI
- Statistics for biologists (Nature Methods)
- PubCrawler (Alert Service for PubMed and GenBank)
- Commonly misidentified cell lines
Protocol resources:
Plasmid databases/ordering:
Antibody validation databases:
Validated qPCR primer repositories:
- PrimerBank
- RTPrimerDB
- Mouse qPCR primer depot (in silico)
Molecular cloning resources:
- NEBCutter2.0
- NEB traditional cloning guide
- SnapGene Viewer (Plasmid map annotation)
Online Protocol resources: