Software and Data
Analytical Tools
Functional enrichment analysis portals:
- DAVID
- Enrichr
- GREAT
- GOrilla (mHG statistics use)
- GSEA/MSigDB
- ProfileChaser (Profile Comparison to GEO)
- GeneChaser
Other useful online bioinformatics tools:
- NCBI BLAST
- Expasy Proteomics Tools
- BioMart (gene annotation information export)
- ClustalOmega (Multiple sequence alignment)
Free standalone bioinformatics software:
- NML library at USC
- HOMER (NGS analysis software suite)
- RStudio (Free IDE for R)
- NGSplot
- piPIPES (transposon and piRNA analysis pipelines)
- MACS2 (ChIP-seq peak caller)
- CEAS (Genomic region annotations)
R programming tips:
- R statistical software
- Bioconductor (Repository for biology R packages )
- R Graph Gallery (plotting recipes)